BIP! Finder - T-lex3: an accurate tool to genotype and estimate population frequencies of transposable elements using the latest short-read whole genome sequencing data

2019 • T-lex3: an accurate tool to genotype and estimate population frequencies of transposable elements using the latest short-read whole genome sequencing data

Authors: María Bogaerts-Márquez; Maite G Barrón; Anna-Sophie Fiston-Lavier; Pol Vendrell-Mir; Raúl Castanera; Josep M Casacuberta; Josefa González

Venue: Bioinformatics

Type: Publication

Abstract: Abstract Motivation Transposable elements (TEs) constitute a significant proportion of the majority of genomes sequenced to date. TEs are responsible for a considerable fraction of the genetic variation within and among species. Accurate genotyping of TEs in genomes is therefore crucial for a complete identification of the genetic differences among individuals, populations and species. Results In this work, we present a new version of T-lex, a computational pipeline that accurately genotypes and estimates the population frequencies of reference... (read more)

Impact:

8.672767E-9 3.0644287E-9 11 7

/ Attention: 0 22

Topics: Genetics Computational biology

DOI: 10.1093/bioinformatics/btz727

External links: Crossref OpenAIRE

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